Removed verbose option from synth_and_ana
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@@ -1,4 +1,4 @@
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# Synthetise new data and analyse it directly to return fit parametersi
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# Synthetise new data and analyse it directly to return fit parameters
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import numpy as np
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import panda as pd
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@@ -12,8 +12,7 @@ from fsl_mrs.utils.fitting import fit_FSLModel
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def synth_and_ana(noise_cov,
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fit_parameters, fit_snr, fit_sdnoise, fit_varnoise,
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df_parameter_synth, basis_path, output_path,
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verbose=False):
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df_parameter_synth, basis_path, output_path):
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"""Synthetise spectra with given noise-covariance, analyse the data and
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return table of fitting parameters with a fit-plot.
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We ignore Gly. Independent scaling of Macro Molecules."""
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@@ -65,11 +64,6 @@ def synth_and_ana(noise_cov,
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'baseline_order': 2}
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res = fit_FSLModel(mrsA, **FitArgs)
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# Plot fitting results.
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if verbose:
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fig = plotting.plot_fit(mrsA, pred=res.pred,
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baseline=res.baseline, out="name")
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# Combine highly correlated metabolites
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combinationList = [['Glu', 'Gln'],
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['GPC', 'PCho'],
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@@ -93,7 +87,4 @@ def synth_and_ana(noise_cov,
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df_params['noise_sd'] = fit_sdnoise
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df_params['noise_var'] = fit_varnoise
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if verbose:
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return df_params, fig
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return df_params
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