konstantin.bosbach/fsl_mrs_mce
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added foundation option some_molecules

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konstantin.bosbach
2021-04-15 11:00:34 +02:00
parent ca5ebfcf1a
commit 4659bd1938
1 changed files with 13 additions and 2 deletions
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15
fsl_mrs_mce/mc_in.py
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@@ -29,11 +29,13 @@ def load_config(input_folder="input/", section="default"):
print(f"No {configFilePath} provided.") print(f"No {configFilePath} provided.")
def conc_df_from_file(input_path="input/", foundation="vivo_average"): def conc_df_from_file(input_path="input/", foundation="vivo_average",
include_molecules=[]):
sections = load_config(input_path, "") sections = load_config(input_path, "")
"""Generates concentration dataframe for mc method. """Generates concentration dataframe for mc method.
Supports different variation types (absolute/delta/relative) Supports different variation types (absolute/delta/relative)
Returns data_frame of different concentrations""" Returns data_frame of different concentrations.
include_molecules needed for option some_molecules"""
# Load all relevant sections # Load all relevant sections
list_parser_parameter = [] list_parser_parameter = []
@@ -64,6 +66,15 @@ def conc_df_from_file(input_path="input/", foundation="vivo_average"):
df_foundation[molecule] = 0 df_foundation[molecule] = 0
except: except:
print("No basis/fit_conc_result.csv file supplied") print("No basis/fit_conc_result.csv file supplied")
if foundation == "some_molecules":
try:
df_foundation = pd.read_csv(
"basis/fit_conc_result.csv").mean().to_frame().transpose()
for molecule in molecule_names:
if molecule not in include_molecules:
df_foundation[molecule] = 0
except:
print("No basis/fit_conc_result.csv file supplied")
else: else:
print("Only foundation mode vivo_average not chosen") print("Only foundation mode vivo_average not chosen")