From ca5ebfcf1a08c8e94e48798dc1a9351eaf60524a Mon Sep 17 00:00:00 2001
From: "konstantin.bosbach" <konstantin.bosbach@mars.uni-freiburg.de>
Date: Thu, 15 Apr 2021 10:40:50 +0200
Subject: [PATCH] added foundation option flat

---
 fsl_mrs_mce/mc_in.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/fsl_mrs_mce/mc_in.py b/fsl_mrs_mce/mc_in.py
index 394f5bb..9a88792 100644
--- a/fsl_mrs_mce/mc_in.py
+++ b/fsl_mrs_mce/mc_in.py
@@ -55,6 +55,7 @@ def conc_df_from_file(input_path="input/", foundation="vivo_average"):
                 "basis/fit_conc_result.csv").mean().to_frame().transpose()
         except:
             print("No basis/fit_conc_result.csv file supplied")
+    # Sets all initial molecules, including some groups, to 0
     if foundation == "flat":
         try:
             df_foundation = pd.read_csv(