diff --git a/fsl_mrs_mce/mc_in.py b/fsl_mrs_mce/mc_in.py index e5d3f7c..a40856c 100644 --- a/fsl_mrs_mce/mc_in.py +++ b/fsl_mrs_mce/mc_in.py @@ -30,7 +30,7 @@ def load_config(input_folder="input/", section="default"): def conc_df_from_file(input_path="input/", foundation="vivo_average", - include_molecules=[]): + include_molecules=[], save_df=True): sections = load_config(input_path, "") """Generates concentration dataframe for mc method. Supports different variation types (absolute/delta/relative) @@ -118,4 +118,7 @@ def conc_df_from_file(input_path="input/", foundation="vivo_average", df_conc[parameter_name] = parameter_values i = i+1 + if save_df: + df_conc.to_csv(str(input_path+"df_conc.csv")) + return df_conc