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added foundation option flat

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konstantin.bosbach
2021-04-15 10:40:15 +02:00
parent 362a559c20
commit 2026ddf566
1 changed files with 14 additions and 0 deletions
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14
fsl_mrs_mce/mc_in.py
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@@ -43,12 +43,26 @@ def conc_df_from_file(input_path="input/", foundation="vivo_average"):
# Load foundation file, a line with e.g. in-vivo averages # Load foundation file, a line with e.g. in-vivo averages
# The code expects a one-line-foundation. # The code expects a one-line-foundation.
molecule_names = ['Ala', 'Asc', 'Asp', 'Cr', 'GABA', 'GPC', 'GSH',
'Glc', 'Gln', 'Glu', 'Ins', 'Lac', 'NAA', 'NAAG',
'PCho', 'PCr', 'PE', 'Scyllo', 'Tau',
'mm', 'Glu+Gln', 'GPC+PCho', 'Cr+PCr',
'Glc+Tau', 'NAA+NAAG']
if foundation == "vivo_average": if foundation == "vivo_average":
try: try:
df_foundation = pd.read_csv( df_foundation = pd.read_csv(
"basis/fit_conc_result.csv").mean().to_frame().transpose() "basis/fit_conc_result.csv").mean().to_frame().transpose()
except: except:
print("No basis/fit_conc_result.csv file supplied") print("No basis/fit_conc_result.csv file supplied")
if foundation == "flat":
try:
df_foundation = pd.read_csv(
"basis/fit_conc_result.csv").mean().to_frame().transpose()
for molecule in molecule_names:
df_foundation[molecule] = 0
except:
print("No basis/fit_conc_result.csv file supplied")
else: else:
print("Only foundation mode vivo_average not chosen") print("Only foundation mode vivo_average not chosen")